This post may contain affiliate links. Please read our disclosure policy.

Our cheesecake cupcakes are a simple 6-ingredient cheesecake treat perfect for parties, holidays and more.

Cherry cheesecake cupcakes sitting on a wire rack
Save This Recipe!
Just enter your email and get it sent to your inbox! Plus you’ll get new recipes from us every week!

Dessert Pefection

A cheesecake cupcake is the perfect combination of our FAVORITE desserts: cheesecake and cupcakes!

Essentially, they are mini cheesecake pieces in cupcake form, and over the last several decades, they have become a staple at many parties, holidays and baby showers.

We love to top the cupcakes with pie fillings or whipped cream to add a little extra something. And we especially love that they store AND freeze well so they are perfect for making ahead or for a last-minute treat!

They’re creamy, delicious, and bite-sized, just like our Cheesecake Stuffed Strawberries and Cheesecake Bites.

WHY WE LOVE IT:

  • Perfect flavors. This makes the yummiest combination of sweet and tart. And you could easily change it up with your favorite pie filling flavor!
  • Just add pie filling. These sweet treats only require 6 ingredients!! We like to keep a few cans of pie filling in our pantry just for whipping these up.
  • Simple steps. With a quick prep and a few steps, these are great for any and every occasion.
A white bowl filled with cherry pie filling.

Ingredients

  • 3 (8-ounce) packages cream cheese softened
  • 1½ cups sugar divided
  • 1½ teaspoons vanilla extract divided
  • 5 large eggs Room temperature eggs incorporate better than cold eggs.
  • 1 cup sour cream – room temperature
  • 1½ cups cherry pie filling – or blueberry, raspberry, or strawberry pie filling 
  • topping variationChocolate Sauce, Caramel Sauce, chocolate ganache, Strawberry Sauce, Nutella, crushed Oreo cookies, or Homemade Whipped Cream & fresh fruit

How to Make Cheesecake Cupcakes

  1. PREP. Preheat the oven to 300°F.
    • Add foil cupcake liners to a cupcake tin. (Do not use paper liners as the bottom of the cheesecake is more likely to burn and stick when it is peeled off.)
  2. CHEESECAKE LAYER. In a large bowl, beat 24 ounces cream cheese, 1 cup sugar, and 1 teaspoon vanilla with a hand mixer until smooth. Add 5 eggs, one at a time, beating after each addition. Spoon into foil-lined cupcake pan.
  3. BAKE. Bake for 25-30 minutes at 300°F. A toothpick inserted in the center should come out clean. Cool for at least 5 minutes.
  4. TOP LAYER. In a small bowl, combine 1 cup sour cream, ½ cup sugar, and ½ teaspoon vanilla until smooth. Spoon on top of cupcakes.
    • Bake for an additional 6-8 minutes, until set. Cool for 10 minutes before moving to wire racks to cool completely.
  5. TOPPING. Top with cherry pie filling (or pie filling of choice) and serve.

Graham Cracker Crust

Try these mini cheesecakes with a Graham Cracker Crust.

You’ll need 1⅛ cups of graham cracker crumbs, 2½ tablespoons of sugar, and ⅓ cup of melted butter.

  1. Preheat the oven to 350°F.
  2. Place cupcake liners into the cupcake pan. 
  3. In a medium bowl combine crust ingredients. Divide it evenly between the 18 cupcake liners. Press the crumb mixture firmly into the liners.
  4. Bake for 5 minutes. Cool completely before adding the cheesecake batter. Complete the recipe as instructed.
Mini cherry cheesecake cupcakes on a wire rack.

More Like This

Cheesecake

Fruity Cupcakes

Collections

4.97 from 55 votes

Cheesecake Cupcakes

By: Lil’ Luna
Bite-size cheesecake cupcakes are a simple 6-ingredient cheesecake treat. Top with cherry pie filling, or any other topping you like!
Servings: 18
Prep: 10 minutes
Cook: 36 minutes
COOL TIME: 10 minutes
Total: 56 minutes

Ingredients 

  • 3 (8-ounce) packages cream cheese, softened
  • cups sugar, divided
  • teaspoons vanilla extract, divided
  • 5 eggs
  • 1 cup sour cream
  • cups cherry pie filling

Instructions 

  • Preheat oven to 300°F.
  • In a large bowl, beat cream cheese, 1 cup sugar, and 1 teaspoon vanilla until smooth. Add eggs, one at a time, beating after each addition. Spoon into foil-lined muffin cups
  • Bake for 25-30 minutes. A toothpick inserted in the center should come out clean. Cool for at least 5 minutes.
  • In a small bowl, combine sour cream, remaining sugar, and vanilla until smooth. Spoon on top of cupcakes. Bake for an additional 6-8 minutes, until set. Cool for 10 minutes before moving to wire racks to cool.
  • Top with pie filling. ENJOY! Store in the refrigerator.

Video

Notes

Add a Graham Cracker Crust?
  • Preheat the oven to 350°F. Place cupcake liners into the cupcake pan. 
  • In a medium bowl combine ⅛ cups of graham cracker crumbs, 2 ½ tablespoons of sugar, and ⅓ cup of melted butter. Divide it evenly between the 18 cupcake liners. Press the crumb mixture firmly into the liners.
  • Bake for 5 minutes. Cool completely before adding the cheesecake batter. Complete the recipe as instructed.
Store. Cover and store leftover cupcakes in an airtight container in the fridge for 5-7 days.
Freeze. Wrap each cheesecake with plastic wrap and store them all in a freezer-safe container for about 4 months. If the cheesecakes have pie filling on top, flash freeze first by placing them on a baking sheet and freeze for 2-3 hours or until the top has hardened, then wrap.

Nutrition

Calories: 293kcal, Carbohydrates: 32g, Protein: 4g, Fat: 16g, Saturated Fat: 9g, Cholesterol: 93mg, Sodium: 158mg, Potassium: 139mg, Sugar: 18g, Vitamin A: 755IU, Vitamin C: 1.9mg, Calcium: 63mg, Iron: 0.5mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Recipe FAQ

How to freeze?

Wrap each cheesecake with plastic wrap and store them all in a freezer-safe container for about 4 months. If the cheesecakes have pie filling on top, flash freeze first by placing them on a baking sheet and freeze for 2-3 hours or until the top has hardened, then wrap.

How to store Cheesecake Cupcakes?

Cover and store leftover cupcakes in an airtight container in the fridge for 5-7 days.

About Kristyn

My name is Kristyn and I’m the mom of SIX stinkin’ cute kids and the wife to my smokin’ hot hubby, Lo. My mom’s maiden name is Luna, and I’m one of the many crafty “Lil’ Lunas” in the fam. On this site I like to share all things creative - from recipes to home decor to gifts and home decor ideas. Welcome!

So Easy & So Yummy

Get my cookbook!

My new cookbook is the ultimate resource for feeding your friends and family with 200+ simple recipes including videos, tips & more!

4.97 from 55 votes (38 ratings without comment)

Leave a comment

Your email address will not be published. Required fields are marked *

Recipe Rating




43 Comments

  1. Marty Taylor says:

    5 stars
    These are perfect Valentine’s Day desserts. Especially when you’ve had a fantastic dinner and have just enough room for something small but delicious! I love this recipe. Thanks for sharing it!

  2. Natalie says:

    3 stars
    Did not have foil liners so I used regular paper cups. Bottoms browned:(. I would put a note in recipe why foil cup liners.

    1. Lil'Luna Team says:

      Thanks for the feedback and for giving the recipe a try!

  3. Katie says:

    5 stars
    I love how easy these are to make and how fun they are for Valentine’s day!

  4. Amy L Huntley says:

    5 stars
    These are so simple to make and everyone loves them! Cheesecake and Cupcakes are the perfect combo!

    1. Karla Paul says:

      Wheres the cookie in this recipe? The picture doesn’t match the final outcome????

      1. Desanil says:

        There is no cookie on her pic… recipe does match the outcome. These were so easy and absolutely delicious, I didn’t want my guests to eat anymore…lol. Next time I’ll stash some away for myself before taking them out. Ty!

  5. Cindy says:

    Can I use paper cupcake liners instead of the foil?

  6. Kellie says:

    Can you use regular size cupcake pan or do they have to be mini size which seems pretty small.. my mom used to make these crust less and loved them can’t find her recipe so I thought regular size cupcake pan

    1. Lil'Luna Team says:

      The recipe calls to use just regular muffin tins/muffin cups. So yes, that should work just great!

  7. Sandra Vasich says:

    Rev up or does not give all ingredient amounts. How many eggs

    1. Lil'Luna Team says:

      The recipe calls for 5 eggs. All the ingredients are listed out at the bottom on the recipe card. 🙂

  8. Marilyn VanDePitte says:

    Iwould like to make these doe a tea. Are these regular cup cake foils or mini cup cake?

    1. Lil'Luna Team says:

      Oh fun!! They are regular cup cake foils. Hope the tea goes well!

  9. Hailey says:

    5 stars
    these are amazing

    1. LilLunaTeam says:

      Thanks so much! Glad you liked them!

  10. Kristi R says:

    5 stars
    Easiest cheesecakes to make ever! They taste great too.