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Our cheesecake cupcakes are a simple 6-ingredient cheesecake treat perfect for parties, holidays and more.

Cherry cheesecake cupcakes sitting on a wire rack
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Dessert Pefection

A cheesecake cupcake is the perfect combination of our FAVORITE desserts: cheesecake and cupcakes!

Essentially, they are mini cheesecake pieces in cupcake form, and over the last several decades, they have become a staple at many parties, holidays and baby showers.

We love to top the cupcakes with pie fillings or whipped cream to add a little extra something. And we especially love that they store AND freeze well so they are perfect for making ahead or for a last-minute treat!

They’re creamy, delicious, and bite-sized, just like our Cheesecake Stuffed Strawberries and Cheesecake Bites.

WHY WE LOVE IT:

  • Perfect flavors. This makes the yummiest combination of sweet and tart. And you could easily change it up with your favorite pie filling flavor!
  • Just add pie filling. These sweet treats only require 6 ingredients!! We like to keep a few cans of pie filling in our pantry just for whipping these up.
  • Simple steps. With a quick prep and a few steps, these are great for any and every occasion.
A white bowl filled with cherry pie filling.

Ingredients

  • 3 (8-ounce) packages cream cheese softened
  • 1½ cups sugar divided
  • 1½ teaspoons vanilla extract divided
  • 5 large eggs Room temperature eggs incorporate better than cold eggs.
  • 1 cup sour cream – room temperature
  • 1½ cups cherry pie filling – or blueberry, raspberry, or strawberry pie filling 
  • topping variationChocolate Sauce, Caramel Sauce, chocolate ganache, Strawberry Sauce, Nutella, crushed Oreo cookies, or Homemade Whipped Cream & fresh fruit

How to Make Cheesecake Cupcakes

  1. PREP. Preheat the oven to 300°F.
    • Add foil cupcake liners to a cupcake tin. (Do not use paper liners as the bottom of the cheesecake is more likely to burn and stick when it is peeled off.)
  2. CHEESECAKE LAYER. In a large bowl, beat 24 ounces cream cheese, 1 cup sugar, and 1 teaspoon vanilla with a hand mixer until smooth. Add 5 eggs, one at a time, beating after each addition. Spoon into foil-lined cupcake pan.
  3. BAKE. Bake for 25-30 minutes at 300°F. A toothpick inserted in the center should come out clean. Cool for at least 5 minutes.
  4. TOP LAYER. In a small bowl, combine 1 cup sour cream, ½ cup sugar, and ½ teaspoon vanilla until smooth. Spoon on top of cupcakes.
    • Bake for an additional 6-8 minutes, until set. Cool for 10 minutes before moving to wire racks to cool completely.
  5. TOPPING. Top with cherry pie filling (or pie filling of choice) and serve.

Graham Cracker Crust

Try these mini cheesecakes with a Graham Cracker Crust.

You’ll need 1⅛ cups of graham cracker crumbs, 2½ tablespoons of sugar, and ⅓ cup of melted butter.

  1. Preheat the oven to 350°F.
  2. Place cupcake liners into the cupcake pan. 
  3. In a medium bowl combine crust ingredients. Divide it evenly between the 18 cupcake liners. Press the crumb mixture firmly into the liners.
  4. Bake for 5 minutes. Cool completely before adding the cheesecake batter. Complete the recipe as instructed.
Mini cherry cheesecake cupcakes on a wire rack.

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4.97 from 55 votes

Cheesecake Cupcakes

By: Lil’ Luna
Bite-size cheesecake cupcakes are a simple 6-ingredient cheesecake treat. Top with cherry pie filling, or any other topping you like!
Servings: 18
Prep: 10 minutes
Cook: 36 minutes
COOL TIME: 10 minutes
Total: 56 minutes

Ingredients 

  • 3 (8-ounce) packages cream cheese, softened
  • cups sugar, divided
  • teaspoons vanilla extract, divided
  • 5 eggs
  • 1 cup sour cream
  • cups cherry pie filling

Instructions 

  • Preheat oven to 300°F.
  • In a large bowl, beat cream cheese, 1 cup sugar, and 1 teaspoon vanilla until smooth. Add eggs, one at a time, beating after each addition. Spoon into foil-lined muffin cups
  • Bake for 25-30 minutes. A toothpick inserted in the center should come out clean. Cool for at least 5 minutes.
  • In a small bowl, combine sour cream, remaining sugar, and vanilla until smooth. Spoon on top of cupcakes. Bake for an additional 6-8 minutes, until set. Cool for 10 minutes before moving to wire racks to cool.
  • Top with pie filling. ENJOY! Store in the refrigerator.

Video

Notes

Add a Graham Cracker Crust?
  • Preheat the oven to 350°F. Place cupcake liners into the cupcake pan. 
  • In a medium bowl combine ⅛ cups of graham cracker crumbs, 2 ½ tablespoons of sugar, and ⅓ cup of melted butter. Divide it evenly between the 18 cupcake liners. Press the crumb mixture firmly into the liners.
  • Bake for 5 minutes. Cool completely before adding the cheesecake batter. Complete the recipe as instructed.
Store. Cover and store leftover cupcakes in an airtight container in the fridge for 5-7 days.
Freeze. Wrap each cheesecake with plastic wrap and store them all in a freezer-safe container for about 4 months. If the cheesecakes have pie filling on top, flash freeze first by placing them on a baking sheet and freeze for 2-3 hours or until the top has hardened, then wrap.

Nutrition

Calories: 293kcal, Carbohydrates: 32g, Protein: 4g, Fat: 16g, Saturated Fat: 9g, Cholesterol: 93mg, Sodium: 158mg, Potassium: 139mg, Sugar: 18g, Vitamin A: 755IU, Vitamin C: 1.9mg, Calcium: 63mg, Iron: 0.5mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Recipe FAQ

How to freeze?

Wrap each cheesecake with plastic wrap and store them all in a freezer-safe container for about 4 months. If the cheesecakes have pie filling on top, flash freeze first by placing them on a baking sheet and freeze for 2-3 hours or until the top has hardened, then wrap.

How to store Cheesecake Cupcakes?

Cover and store leftover cupcakes in an airtight container in the fridge for 5-7 days.

About Kristyn

My name is Kristyn and I’m the mom of SIX stinkin’ cute kids and the wife to my smokin’ hot hubby, Lo. My mom’s maiden name is Luna, and I’m one of the many crafty “Lil’ Lunas” in the fam. On this site I like to share all things creative - from recipes to home decor to gifts and home decor ideas. Welcome!

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4.97 from 55 votes (38 ratings without comment)

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Recipe Rating




43 Comments

  1. Cheryl says:

    Question
    1. Can the cupcake be made a couple days ahead and refriderated til time to add topping and serve?

  2. CARLEE says:

    WHAT SIZE CUPS DID YOU USE

    1. Lil'Luna Team says:

      I use standard muffin cups. You could probably use mini or jumbo, but you’d need to adjust cooking times.

  3. Michael says:

    Do you add the topping before baking or after it cools off

  4. Loretta says:

    Omg,I added all the sugar!

  5. Courtney says:

    5 stars
    These were easy and a big hit! I did not have foil liners so I cut circles from aluminum foil and put one in the bottom of each cup then put the paper liner in. I also used Vanilla wafers for the crust. Just put a single cookie in each cupcake liner before spooning the cheesecake mixture in. Sooo good. Thank you!

    1. Lil'Luna Team says:

      You’re welcome! So glad you enjoyed. Thanks for sharing about the crust too. We had someone asking about doing this, so that’s great to hear that the vanilla wafer in the bottom is tasty!

  6. Kathy says:

    Cheesecake to checkout

  7. Courtney says:

    This sounds delicious but I’d like a “crust”. Would putting vanilla wafer in the bottom of the cup change the outcome? Would any baking time or temp adjustments need to be made?

    1. Lil'Luna Team says:

      I haven’t tried adding a vanilla wafer, but I imagine that would work just fine and be really tasty. You’ll have to let us know if you end up trying that and how it turns out.

  8. Theresa Solitario says:

    How high do you fill the cupcake liners and how many cupcakes does each recipe make?

    1. Lil'Luna Team says:

      I fill the liners about 2/3 full. And the recipe yields about 18 cupcakes (servings).

  9. Tina G. says:

    5 stars
    I was so excited to find this awesome recipe, as I’ve used this same one for years, but lost it in a move. I’ve never made these in regular sized cups, only the mini (I also add a tiny bit of almond extract to mine, freeze them to have on hand for munchies.), so the larger size will be great to take for football tailgating and watch parties and other events!
    I really enjoy your website! Thank you for sharing your recipes!

  10. JoAnne says:

    5 stars
    Love cheese cake, can’t wait to make these for Easter dinner!